Protein Details: Gamma-aminobutyric acid receptor subunit rho-1

Protein ID

ICDB_Pro_0631

Protein Name

Gamma-aminobutyric acid receptor subunit rho-1

Gene Name

Gabrr1

Organism

Mus musculus (Mouse)

Length

480 amino acids

AlphaFoldDB

AF-P56475-F1-model_v4.pdb

Function

Rho subunit of the pentameric ligand-gated chloride channels responsible for mediating the effects of gamma-aminobutyric acid (GABA); the major inhibitory neurotransmitter in the brain. Rho-containing GABA-gated chloride channels are a subclass of GABA(A) receptors (GABAARs) entirely composed of rho subunits; where GABA molecules bind at the rho intersubunit interfaces. When activated by GABA; rho-GABAARs selectively allow the flow of chloride anions across the cell membrane down their electrochemical gradient. Rho-1 subunits are primarily expressed in retina where rho-1-containing GABAARs play a role in retinal neurotransmission (By similarity). Rho-1 GABAARs are also involved in neuronal tonic (extrasynaptic) and phasic (synaptic) transmission in the Purkinje neurons of the cerebellum. Rho-1 GABAARs may also contribute to the regulation of glial development in the cerebellum by controlling extrasynaptic transmission.

Sequence

MLAVQNMKFGIFLLWWGWVLAAESTAHWPGREVHEPSRKGSRPQRQRRGAHDDAHKQGSPILRRSSDITKSPLTKSEQLLRIDDHDFSMRPGFGGPAIPVGVDVQVESLDSISEVDMDFTMTLYLRHYWKDERLSFPSSNNLSMTFDGRLVKKIWVPDMFFVHSKRSFIHDTTTDNVMLRVQPDGKVLYSLRVTVTAMCNMDFSRFPLDTQTCSLEIESYAYTEDDLMLYWKKGNDSLKTDERISLSQFLIQEFHTTTKLAFYSSTGWYNRLYINFTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPARVPLGITTVLTMSTIITGVNASMPRVSYIKAVDIYLWVSFVFVFLSVLEYAAVNYLTTVQERKERKLREKISCTCGLPQPRGVMLDSSYSDGEVNDLGGYMPENGEKPDRMMVQLTLASERGSPQRKGQRGSYVSMRINTHAIDKYSRIIFPAAYILFNLIYWSIFS

PDB Structures

Ligand Binding

1. DICL_CP

2. DICL_Pep

Binding Site

BINDING 126; /ligand="4-aminobutanoate": "ligand shared between two neighboring rho subunits"; /note="in chain A"; BINDING 190; /ligand="4-aminobutanoate": "ligand shared between two neighboring rho subunits"; /note="in chain A"; BINDING 218; /ligand="4-aminobutanoate": "ligand shared between two neighboring rho subunits"; /note="in chain B";

Disease

Location

Expressed in the cerebellum

DOI ID

10.1371/journal.pbio.1000112; 10.1113/jphysiol.2006.112482; 10.1073/pnas.1419632111

RefSeq

NP_032101.3

Feature